If I have this all right (and if I don't someone will jump in): I think all the softops are manual, never have seen a power softop on a wrangler. Yes, you can get a hardtop with a sunroof, or even the 2 piece hardtop where the "targa" part over the front seats comes off separate from the back. I think the soft top that folds back is a 3rd party top?
I may be crazy, but today I am ordering the 2 piece Bestop hardtop with the option roof rack to hold the targa part. Price with tax and installation, $3,300.