May not have been installed correctly from the factory, but that is your master cylinder pushrod connection to the brake pedal, if that's the way it's sitting right now, I'd say it looks like it's in the correct position. Maybe get the dealer to order or install a new clip just to be safe, in case it has some defect.
2013 JKU Rubicon - Commando
Teraflex 2.5" spring lift, Teraflex monster front and rear trackbars, G2 wheel adapters, Goodyear Wrangler MTR Kevlar 35 x 12.5 x 17, Superchips Flashcal, Warn Zeon 10, Smittybilt XRC bumpers front and rear with tire carrier, Metal Cloak Overland Fenders, Uniden Bearcat 980, Homemade side rails. 50" and 20" light bars and brackets.