Welcome to the club. I have leaks also. Living in North Florida (South Georgia) rain an almost constant thing. Hurricanes are nice, too.
I have a 2011 jku with a soft top, and it has leaked every time it has rained since I bought it in December. I have taken it in twice for this problem, and both time they said they fixed it.
I took it it again and had the Service Manager look at it. He said he is going to do his best to get it fixed, but the way he said it wasnt very reassuring. I have (although very little) confidence that if it can be fixed, he will make sure it gets fixed. I am taking it in tomorrow morning. I love driving 30 mintues to leave my Jeep with the people at the dealership!
The question I have as of today is... can it be fixed?
I live about 45 minutes from the coast, and I am surrounded by springs, sinkholes, rivers, and lakes. To me this seems like the perfect reason to have a soft top. It also rains all the time. During the summer it rains every day. Hard. I dont know yet what it will be like when the real rains starts.
As of today I am waiting to see what happens. Other than the water in the interior of the vehicle where it doesnt belong, the Jeep is awesome. I am worried about the integrity of the interior components though. I wonder if the moisture is going to affect things down the road.
If I were you I would take it to the dealer as many times as it takes to get them to first acknowledge the problem and second to fix it.
Hope that helps.