check the electrical connectors for the doors. Sometimes they aren't making electrical contact even though the two pieces are plugged together. Try unplugging them and then plugging them back in. Also check for mud or anything that might be in between the connectors.
2012 Black JKUR. 15" wheels/33"tires, Hurricane Flat fenders, Trailforce HD rear bumper, Spiderwebshades on top and on Rancho tube doors, RR aluminum hood catches, QT tonneau cover, Mopar hood lock, Bestop underseat lock box