Asking for tire/wheel recommendations feels like a natural question, but there are way too many options for anybody to really help you here.
Here's what I would recommend. Check out some of the JK picture threads on this site, including the "JK Lift Reviews" thread and the various trail picture threads. Then head over to Quadratec.com and take a look at their "build ups." Then sign up for their catalog, which will have lots of good pics, ideas, and general prices (though FYI, you can usually buy stuff cheaper elsewhere). During this process, make sure you're hanging around here reading posts and engaging with the conversations and asking questions when somebody says something you don't understand.
This will all start to pull you in certain directions with wheels, tires, and everything else.
In the end, you'll have better results with "What do you think of THIS particular tire/wheel" than with "What tire/wheel, of the innumerable options available, I should get".