So you have a hard top, and full steel doors? (Or one anyway).
So your options: Junk yard door and repaint, or replace full doors with half doors.
Here's your big issue with going to half doors: for several YJ model years, the soft top and hard top guys at Jeep didn't actually talk to one another. so the hardtop uses a rounded upper door shape, and the soft top uses a square shape. You can not mix these! The soft top doors you're talking about getting will most likely be the wrong shape.
Yeah, it's a bad answer. But better to hear it now, right?
Before you buy any Bestop door product, please call our support team at 800-845-3567. There are lots of little trivia details, and they'll have a better answer than me. Or send a photo of your jeep to email@example.com
and make sure it will all work.