Man this is weird! Im having the exact same problem.Just replace my 2.5" OMe with a Re superflex (8 adjustable control arms) and got an advance adapters SYE and tom wood cv shaft.I test rode the jeep after the lift and SYE but didnt notice anything until i hit 60 MPH on the highway.A pretty loud growl that IVe never heard before.I adjusted the upper arms according to the RE instructions,and had both pinions in line with the driveshaft.I readjusted the rear uppers after a call to TOm wood,who suggested I set the rear pinion 2-3 deg below the driveshaft to allow for torque pulling up on the pinion.i just came back from a 70MPH test ride.It seems better,but I still hear way more noise than before.IM beginning to think it might be just my MTR,s sitting alot further away from my fender flares allowing the noise to be amplified? I might pull the front shaft out for a test drive to see if its altered angle has any thing to do with it...