Same with my Supertop NX. Much better at keeping rain out than my friggin' hardtop.
I'm having a bad leak at both rear door surrounds. It's frustrating and I had to pull the drain plugs due to the pool of water.I've been having issues with mine. The passenger side leaks where the corner of the windshield and door meet. Drives me crazy!!! I called Bestop yesterday and they are sending me more foam pieces to put over the existing ones. I hope that will work.