Does this only happen when you are driving at highway speeds? The tube that drains the water out faces towards the front of the jeep in the engine bay. I have found that around town the water drips out no problem, but when I get on the highway the air rushing up under the jeep blocks the tube and forces the water to dump over into the passenger side.
If this is your problem, I saw one guy put a 90* turn on the end of the tube so it points down. He said that solved his problem. I will probably try that next summer.